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Species belonging to selected taxon:

Populus tremula x Populus tremuloides



ABOUT THIS RECORD

ID: MNEST002204
species: Populus tremula x Populus tremuloides
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CATGTGCCTGTCTTCCCCATC

mismatches: 5
bulges: 0

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pre-miRNA
GCAGAGAAGGTGTGTGTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACT
CTTACCTACTATAGATTTTGTTGGCCTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCATCATGATCACTACCGCACCTATAT


dot-bracket secondary structure
.......(((((((.((((.((.(((((.((((..(((((((((....((((((((((((..(((((((..(((((.(((..(((....)))..))).))
)))..(((...))))))))))..))....))))))))))....)))))))))..)))).))))).)).))))...)))))))....



SIMILARITIES
miRBase ptc-MIR164e: 1e-72

PMRD ppl-miR164: 7e-87

microPC miR164: 9e-74
UniProt no hits

RFAM MIR164: 2e-72
most similar mature miRNAs

Identical with: miR164 from microPC (MNEST046101)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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